Molecular Dynamics Replicated Data Model
written by Wolfgang Christian
The Molecular Dynamics Replicated Data Model implements a parallel computer program that uses a 3D Lennard-Jones potential truncated at a distance of three molecular diameters. Each thread computes a portion of the force on each atom and these contributions are summed to compute the total acceleration using the Verlet ODE algorithm. Allocating memory for each thread's avoids the problem of parallel threads simultaneously writing to array elements.
The Molecular Dynamics Replicated Data Model was developed using the Easy Java Simulations (EJS) modeling tool. It is distributed as a ready-to-run (compiled) Java archive.
Please note that this resource requires at least version 1.6 of Java (JRE).
1 source code document is available
The source code zip archive contains an XML representation of the Molecular Dynamics Replicated Data Model. Unzip this archive in your Ejs workspace to compile and run this model using EJS.
download 8kb .zip
Last Modified: August 13, 2014
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Molecular Dynamics Replicated Data Model:
Is Based On Easy Java Simulations Modeling and Authoring Tool
The Easy Java Simulations Modeling and Authoring Tool is needed to explore the computational model used in the Molecular Dynamics Replicated Data Model.relation by Wolfgang Christian
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